PATIKAweb: A Web interface for analyzing biological pathways through advanced querying and visualization

Dogrusoz U., Erson E., Giral E., Demir E., Babur O., Cetintas A., ...More

Bioinformatics, vol.22, no.3, pp.374-375, 2006 (SCI-Expanded, Scopus) identifier identifier

  • Publication Type: Article / Article
  • Volume: 22 Issue: 3
  • Publication Date: 2006
  • Doi Number: 10.1093/bioinformatics/bti776
  • Journal Name: Bioinformatics
  • Journal Indexes: Science Citation Index Expanded (SCI-EXPANDED), Scopus
  • Page Numbers: pp.374-375
  • Isparta University of Applied Sciences Affiliated: Yes

Abstract

Summary: PATIKAweb provides a Web interface for retrieving and analyzing biological pathways in the PATIKA database, which contains data integrated from various prominent public pathway databases. It features a user-friendly interface, dynamic visualization and automated layout, advanced graph-theoretic queries for extracting biologically important phenomena, local persistence capability and exporting facilities to various pathway exchange formats. © The Author 2005. Published by Oxford University Press. All rights reserved.